SNP Profiles of MO 20   View Data

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 Key

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_Input profile
CTAACCTTCTACCTGTCTCTAAAGCTAA
1._GC-01-121-6-18
CTAACCTTCTACCTGTCTCTAAAGCTAA
2._MO_20
CTAACCTTCTACCTGTCTCTAAAGCTAA
3._MO_20
CTAACCTTCTACCTGTCTCTAAAGCTAA
4._MO_20
CTAACCTTCTACCTGTCTCTAAAGCTAA
5._MO_20
CTAACCTTCTACCTGTCTCTAAAGCTAA
6._MO_20
CTAACCTTCTACCTGTCTCTAAAGCTAA
7._MO_20
CTAACCTTCTACCTGTCTCTAAAGCTAA
8._MO_20
CTAACCTTCTACCTGTCTCTAAAGCTAA
9._MO_20
CTAACCTTCTACCTGTCTCTAAAGCTAA
10._GC-01-121-6-18
CTAACCTTCTACCTGTCTCTAAAGCTAA
11._GC-01-121-6-18
CTAACCTTCTACCTGTCTCTAAAGCTAA
12._GC-01-121-6-18
CTAACCTTCTACCTGTCTCTAAAGCTAA
13._GC-01-121-6-18
CTAACCTTCTACCTGTCTCTAAAGCTAA
14._GC-08-167-4-10
CTAACCTTCTACCTGTCTCTAAAGCTAA
15._GC-08-167-4-10
CTAACCTTCTACCTGTCTCTAAAGCTAA
16._GC-08-167-4-10
CTAACCTTCTACCTGTCTCTAAAGCTAA
17._GC-08-167-4-10
CTAACCTTCTACCTGTCTCTAAAGCTAA
18._MO_20
CTAACCTTCTACCTGTCTCTAAAGCTAA
19._GC-01-121-6-18
CTAACCTTCTACCTGTCTCTAAAGCTAA
20._RUQ_1566
__CC____GT_CT_AG_AA
21._MO_20
CTAACCTTCTACCTGTCTTTAAAGCTAA
22._RUQ_1566
_--TT___-____--
23._RUQ_1566
__GG_________CT_
24._MO_20
CCGGCCTTCCCCTTTTCTCCTTGGCCAA
25._MO_20
CCGGCGCCTT_TTTTCCCCAAGGCCGG
26._GC-01-121-6-18
CCGGCGCCTT_TTTTCCCCAAGGCCGG
27._MO_20_Fld#_171_Plt#_1
AGAAGGAAAGACAGAC__AAAGAGAA
28._RUQ_1566
AGAAGGAAAGACAGAC__AAAGAGAA
29._MITC-000675
AGAAGGAAAGACAGAC__AAAGAGAA
30._MO_20_Fld#_74_Plt#_1
AGAACCAGAAAAGGAA__AAAAAGAG
 1516171819202122232425262728
_Input profile
CTATCGCTCTCGGGAATTCCCGGTCTAC
1._GC-01-121-6-18
CTATCGCTCTCGGGAATTCCCGGTCTAC
2._MO_20
CTATCGCTCTCGGGAATTCCCGGTCTAC
3._MO_20
CTATCGCTCTCGGGAATTCCCGGTCTAC
4._MO_20
CTATCGCTCTCGGGAATTCCCGGTCTAC
5._MO_20
CTATCGCTCTCGGGAATTCCCGGTCTAC
6._MO_20
CTATCGCTCTCGGGAATTCCCGGTCTAC
7._MO_20
CTATCGCTCTCGGGAATTCCCGGTCTAC
8._MO_20
CTATCGCTCTCGGGAATTCCCGGTCTAC
9._MO_20
CTATCGCTCTCGGGAATTCCCGGTCTAC
10._GC-01-121-6-18
CTATCGCTCTCGGGAATTCCCGGTCTAC
11._GC-01-121-6-18
CTATCGCTCTCGGGAATTCCCGGTCTAC
12._GC-01-121-6-18
CTATCGCTCTCGGGAATTCCCGGTCTAC
13._GC-01-121-6-18
CTATCGCTCTCGGGAATTCCCGGTCTAC
14._GC-08-167-4-10
CTATCGCTCTCGGGAATTCCCGGTCTAC
15._GC-08-167-4-10
CTATCGCTCTCGGGAATTCCCGGTCTAC
16._GC-08-167-4-10
CTATCGCTCTCGGGAATTCCCGGTCTAC
17._GC-08-167-4-10
CTATCGCTCTCGGGAATTCCCGGTCTAC
18._MO_20
CTATCGCTCTCGGG_TTCCCGGTCTAC
19._GC-01-121-6-18
CTATCGCTCTCGGG_TTCCCGGTCTAC
20._RUQ_1566
_____CGGGAA_CCCG__AC
21._MO_20
CTATCGCTCTCGGGAATTCCCGGTCTAC
22._RUQ_1566
____---_-CC-GG-AC
23._RUQ_1566
CT___CTCG___CCCG___
24._MO_20
TTTTGGTTTTCCGTAACCCCGGGGCCAA
25._MO_20
CTAAGGCCCCGGGGGGCCACCCGGCCAA
26._GC-01-121-6-18
CTAAGGCCCCGGGGGGCCACCCGGCCAA
27._MO_20_Fld#_171_Plt#_1
AGATCGAGAGCGCC_AACCCGAC_AC
28._RUQ_1566
AGATCGAGAGCGCC_AACCCGAC_AC
29._MITC-000675
AGATCGAGAGCGCC_AACCCGAC_AC
30._MO_20_Fld#_74_Plt#_1
AAAAGGAAGGCCCC_AACCCCAA_CC
 293031323334353637383940  
_Input profile
AGGGAACTAGCCACCTGTACATCGX_XX_X
1._GC-01-121-6-18
AGGGAACTAGCCACCTGTACATCGX_XX_X
2._MO_20
AGGGAACTAGCCACCTGTACATCGX_XX_X
3._MO_20
AGGGAACTAGCCACCTGTACATCGX_XX_X
4._MO_20
AGGGAACTAGCCACCTGTACATCGX_XX_X
5._MO_20
AGGGAACTAGCCACCTGTACATCGX_XX_X
6._MO_20
AGGGAACTAGCCACCTGTACATCGX_XX_X
7._MO_20
AGGGAACTAGCCACCTGTACATCGX_XX_X
8._MO_20
AGGGAACTAGCCACCTGTACATCGX_XX_X
9._MO_20
AGGGAACTAGCCACCTGTACATCGX_XX_X
10._GC-01-121-6-18
AGGGAACTAGCCACCTGTACATCGX_XX_X
11._GC-01-121-6-18
AGGGAACTAGCCACCTGTACATCGX_XX_X
12._GC-01-121-6-18
AGGGAACTAGCCACCTGTACATCGX_XX_X
13._GC-01-121-6-18
AGGGAACTAGCCACCTGTACATCGX_XX_X
14._GC-08-167-4-10
AGGGAACTAGCCACCTGTACATCGX_XX_X
15._GC-08-167-4-10
AGGGAACTAGCCACCTGTACATCGX_XX_X
16._GC-08-167-4-10
AGGGAACTAGCCACCTGTACATCGX_XX_X
17._GC-08-167-4-10
AGGGAACTAGCCACCTGTACATCGX_XX_X
18._MO_20
AGGGAACTAGCCACCTGTACATCGX_XX_X
19._GC-01-121-6-18
AGGGAACTAGCCACCTGTACATCGX_XX_X
20._RUQ_1566
____AG____AC__X_XX_X
21._MO_20
AGGGAACTAGCCACCTGTACATCGX_XX_X
22._RUQ_1566
GG_---CC----__X_XX_X
23._RUQ_1566
__AA_AGGGACCT_CC__X_XX_X
24._MO_20
GGAGTTCCAACCCCTTGGCCAACCX_XX_X
25._MO_20
AGGGAACCGGCCAATTTTAATTGGX_XX_X
26._GC-01-121-6-18
AGGGAACCGGCCAATTTTAATTGGX_XX_X
27._MO_20_Fld#_171_Plt#_1
_GGAAAGAGGGACAGACACATCGX_XX_X
28._RUQ_1566
_GGAAAGAGGGACAGAC_ATCGX_XX_X
29._MITC-000675
_GGAAAGAGGGACAGAC_ATCGX_XX_X
30._MO_20_Fld#_74_Plt#_1
_GGATAGAAGGAAAGACCCATGGX_XX_X

Input profile: MO_20

 
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Mars Center for Cocoa Science, Brazil
Location: 8410 1
 Dapeng Zhang, 2016

1._MO_20 GC-01-121-6-18

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

2._MO_20

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1618 9
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

3._MO_20

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1618 11
 Dapeng Zhang, 2016

4._MO_20

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1618 1 > FP
 Dapeng Zhang, 2016

5._MO_20

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1618 2 > FP
 Dapeng Zhang, 2016

6._MO_20

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1618 4 > FP
 Dapeng Zhang, 2016

7._MO_20

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8410 2
 Dapeng Zhang, 2016

8._MO_20

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8410 3
 Dapeng Zhang, 2016

9._MO_20

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8410 4
 Dapeng Zhang, 2016

10._MO_20 GC-01-121-6-18

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP3
 Mars, 2018

11._MO_20 GC-01-121-6-18

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP4
 Mars, 2018

12._MO_20 GC-01-121-6-18

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

13._MO_20 GC-01-121-6-18

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

14._MO_20 GC-08-167-4-10

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

15._MO_20 GC-08-167-4-10

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

16._MO_20 GC-08-167-4-10

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

17._MO_20 GC-08-167-4-10

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

18._MO_20

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1618 10 > F
 Dapeng Zhang, 2016

19._MO_20 GC-01-121-6-18

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP2
 Mars, 2018

20._MO_20 RUQ_1566

identical
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

21._MO_20

98.8 %
40 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B D238 T2
 Dapeng Zhang, 2016

22._MO_20 RUQ_1566

83.3 %
6 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

23._MO_20 RUQ_1566

80.8 %
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Location: GBR207
 Jocelyn De Wever et al., 2019

24._MO_20

53.8 %
40 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D 809
 Dapeng Zhang, 2016

25._MO_20

52.6 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1618 13
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

26._MO_20 GC-01-121-6-18

52.6 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

27._MO_20 MO_20_Fld#_171_Plt#_1

51.4 %
35 shared markers

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USDA-TARS, United States of America
Location: Field: 171, Tree: 1
 Mars, 2018

28._MO_20 RUQ_1566

50 %
34 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

29._MO_20 MITC-000675

50 %
34 shared markers

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USDA-SHRS, United States of America
 Mars, 2018

30._MO_20 MO_20_Fld#_74_Plt#_1

35.7 %
35 shared markers

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USDA-TARS, United States of America
Location: Field: 74, Tree: 1
 Mars, 2018

 

  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP193
36TcSNP151 37TcSNP150 38TcSNP144 39TcSNP32 40TcSNP25